Package index • epicR

All functions

Cget_agent_events(): Returns all events of an agent.
Cget_agent_size_bytes(): Returns the size of agent struct in bytes
Cget_all_events(): Returns all events.
Cget_all_events_matrix(): Returns a matrix containing all events
Cget_event(): Returns the events stack.
Cget_events_by_type(): Returns all events of a certain type.
Cget_inputs(): Returns inputs
Cget_n_events(): Returns total number of events.
Cget_output(): Main outputs of the current run.
Cget_output_ex(): Extra outputs from the model
Cget_progress(): Returns current simulation progress.
Cget_runtime_stats(): Returns run time stats.
Cget_settings(): Returns current settings.
Cget_smith(): Returns agent Smith.
Cset_input_var(): Sets input variables.
Cset_settings_var(): Sets model settings.
calc_event_stack_size(): Calculate recommended event_stack_size for a given number of agents
calibrate_COPD_inc(): Solves stochastically for COPD incidence rate equation.
calibrate_explicit_mortality(): Calibrates explicit mortality
calibrate_explicit_mortality2(): Calibrates explicit mortality by Amin
calibrate_smoking(): Calibrates smoking
epicR-package epicR: epicR package
estimate_memory_required(): Estimate memory required for simulation
export_figures(): Runs the model and exports an excel file with all output data
express_matrix(): Express matrix.
get_agent_events(): Returns events specific to an agent.
get_agent_size_bytes(): Get size of agent struct in bytes (from C code)
get_all_events(): Returns all events.
get_available_memory(): Get available system memory (platform-specific)
get_default_settings(): Exports default settings
get_errors(): Returns errors
get_events_by_type(): Returns certain events by type
get_input(): Returns a list of default model input values
get_list_elements(): Get list elements
get_sample_output(): Returns a sample output for a given year and gender.
init_session(): Initializes a model. Allocates memory to the C engine.
mvrnormArma(): Samples from a multivariate normal
report_COPD_by_ctime(): Reports COPD related stats.
report_exacerbation_by_time(): Reports exacerbation-related stats.
resume(): Resumes running of model.
run(): Runs the model. Auto-initializes if no session is active.
sanity_COPD(): Basic COPD test.
sanity_check(): Basic tests of model functionality. Serious issues if the test does not pass.
simulate(): Convenience function: run simulation and return results
terminate_session(): Terminates a session and releases allocated memory.
test_case_detection(): Returns results of Case Detection strategies
validate_COPD(): Returns results of validation tests for COPD
validate_diagnosis(): Returns results of validation tests for diagnosis
validate_exacerbation(): Returns results of validation tests for exacerbation rates
validate_gpvisits(): Returns results of validation tests for GP visits
validate_lung_function(): Returns results of validation tests for lung function
validate_medication(): Returns results of validation tests for medication module.
validate_mortality(): Returns results of validation tests for mortality rate
validate_overdiagnosis(): Returns results of validation tests for overdiagnosis
validate_payoffs(): Returns results of validation tests for payoffs, costs and QALYs
validate_population(): Returns simulated vs. predicted population table and a plot
validate_smoking(): Returns results of validation tests for smoking module.
validate_survival(): Returns the Kaplan Meier curve comparing COPD and non-COPD
validate_symptoms(): Returns results of validation tests for Symptoms
validate_treatment(): Returns results of validation tests for Treatment